Publications

Publications 2012

Erdmann S, Garrett RA. (2012) Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol. doi: 10.1111/j.1365-2958.2012.08171.x. [Epub ahead of print]

Ellinger P, Arslan Z, Wurm R, Tschapek B, Mackenzie C, Pfeffer K, Panjikar S, Wagner R, Schmitt L, Gohlke H, Pul Ü, Smits SH. (2012) The crystal structure of the CRISPR-associated protein Csn2 from Streptococcus agalactiae. J Struct Biol. 178:350-62. Epub 2012 Apr 17.

Stratmann T, Pul Ü, Wurm R, Wagner R, Schnetz K. (2012) RcsB-BglJ activates the Escherichia coli leuO gene, encoding an H-NS antagonist and pleiotropic regulator of virulence determinants. Mol Microbiol. 83:1109-23. doi: 10.1111/j.1365-2958.2012.07993.x. Epub 2012 Feb 14.

Sharma C, Heidrich N. (2012) Small RNAs and virulence in bacterial pathogens. RNA Biol. 9. [Epub ahead of print]

Marchfelder A, Fischer S, Brendel J, Stoll B, Maier LK, Jäger D, Prasse D, Plagens A, Schmitz RA, Randau L. (2012) Small RNAs for defence and regulation in archaea. Extremophiles. [Epub ahead of print]

Plagens A, Tjaden B, Hagemann A, Randau L, Hensel R. (2012) Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax. J Bacteriol. 194:2491-500. Epub 2012 Mar 9.

http://www.ncbi.nlm.nih.gov/pubmed/22767603Fischer S, Maier LK, Stoll B, Brendel J, Fischer E, Pfeiffer F, Dyall-Smith M, Marchfelder A. (2012) An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA. J Biol Chem. 2012 Jul 5. [Epub ahead of print]

Deng L, Kenchappa CS, Peng X, She Q, Garrett RA. (2012) Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus. Nucleic Acids Res. 40:2470-80. Epub 2011 Dec 1.

Peng X, Garrett RA, She Q. (2012) Archaeal viruses-novel, diverse and enigmatic. Sci China Life Sci. 55:422-33. Epub 2012 May 27.

Publications before 2012

Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471(7340): 602-607.

Garrett RA, Shah SA, Vestergaard G, Deng L, Gudbergsdottir S, Kenchappa CS, Erdmann S, She Q (2011) CRISPR-based immune systems of the Sulfolobales: complexity and diversity. Biochem 39(1): 51-57.

Garrett RA, Vestergaard G, Shah SA (2011) Archaeal CRISPR-based immune systems: exchangeable functional modules. Trends Microbiol 19(11): 549-556. Epub 2011 Sep 2022.

Gudbergsdottir S, Deng L, Chen Z, Jensen JV, Jensen LR, She Q, Garrett RA (2011) Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol 79(1): 35-49

Jore MM, Lundgren M, van Duijn E, Bultema JB, Westra ER, Waghmare SP, Wiedenheft B, Pul Ü, Wurm R, Wagner R, Beijer MR, Barendregt A, Zhou K, Snijders AP, Dickman MJ, Doudna JA, Boekema EJ, Heck AJ, van der Oost J, Brouns SJ (2011) Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat Struct Mol Biol  18(5): 529-536. Epub 2011 Apr 2013.

Shah SA, Garrett RA (2011) CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems. Res Microbiol 162(1): 27-38. Epub 2010 Sep 2021.

You XY, Liu C, Wang SY, Jiang CY, Shah SA, Prangishvili D, She Q, Liu SJ, Garrett RA (2011) Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles. Extremophiles 15(4): 487-497

Pul Ü, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 75(6): 1495-1512

Westra ER, Pul Ü, Heidrich N, Jore MM, Lundgren M, Stratmann T, Wurm R, Raine A, Mescher M, Van Heereveld L, Mastop M, Wagner EG, Schnetz K, Van Der Oost J, Wagner R, Brouns SJ (2010) H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol Microbiol 77(6): 1380-1393

Lillestøl RK, Shah SA, Brugger K, Redder P, Phan H, Christiansen J, Garrett RA (2009) CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol 72(1): 259-272

Shah SA, Hansen NR, Garrett RA (2009) Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism. Biochem Soc Trans 37(Pt 1): 23-28.

Vestergaard G, Shah SA, Bize A, Reitberger W, Reuter M, Phan H, Briegel A, Rachel R, Garrett RA, Prangishvili D (2008) Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system. J Bacteriol 190(20): 6837-6845. Epub 2008 Aug 6822.

Lillestøl RK, Redder P, Garrett RA, Brugger K (2006) A putative viral defence mechanism in archaeal cells. Archaea 2(1): 59-72.

Prangishvili D, Forterre P, Garrett RA (2006) Viruses of the Archaea: a unifying view. Nat Rev Microbiol 4(11): 837-848.

Prangishvili D, Garrett RA, Koonin EV (2006) Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res 117(1): 52-67. Epub 2006 Feb 2028.

Prangishvili D, Garrett RA (2005) Viruses of hyperthermophilic Crenarchaea. Trends Microbiol 13(11): 535-542. Epub 2005 Sep 2008.

Greve B, Jensen S, Brugger K, Zillig W, Garrett RA (2004) Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea 1(4): 231-239.

Peng X, Brugger K, Shen B, Chen L, She Q, Garrett RA (2003) Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes. J Bacteriol 185(8): 2410-2417.

She Q, Peng X, Zillig W, Garrett RA (2001) Gene capture in archaeal chromosomes. Nature 409(6819): 478.