Here you find the data used in the paper
Jannik Olbrich, Thomas Büchler, Enno Ohlebusch: Generating Multiple Alignments on a Pangenomic Scale, 2024
Chromosome 19
Data:
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr19.1000.fa.xz.00
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr19.1000.fa.xz.01
Decompress with
cat chr19.1000.fa.xz.00 chr19.1000.fa.xz.01 | xz -d > chr19.1000.fa
Be aware that the resulting file will be approximately 56 GB in size.
Alignments:
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr19_20.aligned.fa.xz.00
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr19_20.aligned.fa.xz.01
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr19_20.aligned.fa.xz.02
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr19_100.aligned.fa.xz.00
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr19_100.aligned.fa.xz.01
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr19_100.aligned.fa.xz.02
Chromosome 1
Data:
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1.tar.xz.00
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1.tar.xz.01
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1.tar.xz.02
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1.tar.xz.03
Alignments:
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1_10_20.aligned.fa.xz.00
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1_10_20.aligned.fa.xz.01
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1_10_20.aligned.fa.xz.02
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1_10_100.aligned.fa.xz.00
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1_10_100.aligned.fa.xz.01
https://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/MSA/chr1_10_100.aligned.fa.xz.02