• Algorithmen
• Pattern matching
• Sequenzanalyse
• Genetik

Pan-Genome Structures: Desing, Construction, and Applications

• Thomas Büchler, Jannik Olbrich, Enno Ohlebusch. Efficient short read mapping to a pangenome that is represented by a graph of ED strings. Journal: Bioinformatics 2023, https://doi.org/10.1093/bioinformatics/btad320

• Uwe Baier; Thomas Büchler; Enno Ohlebusch; Pascal Weber. Edge Minimization in de Bruijn Graphs. Information and Computation 2022, doi.org/10.1016/j.ic.2021.104795

• Thomas Büchler; Caroline Räther, Pascal Weber; Enno Ohlebusch. Coordinate Systems for Pangenome Graphs based on the Level Function and Minimum Path Covers. Conference: BIOINFORMATICS 2021 :  doi.org/10.5220/0010165400210029 (Award: Best Student Paper)

• Uwe Baier; Thomas Büchler; Enno Ohlebusch; Pascal Weber. Edge Minimization in de Bruijn Graphs. Data Compression Conference 2020, doi.org/10.1109/DCC47342.2020.00030

• Thomas Büchler; Enno Ohlebusch. An improved encoding of genetic variation in a Burrows-Wheeler transform. Journal: Bioinformatics 2019 ,
• https://doi.org/10.1093/bioinformatics/btz782

Transforming a bidirected sequence graph into an EDS Graph, to enable the usage of the HPRC reference in the software GED-MAP.