M.Sc. Thomas Büchler

Interessen

  • Algorithmen
  • Pattern matching
  • Sequenzanalyse
  • Genetik

Projekt

Pan-Genome Structures: Desing, Construction, and Applications

Publikationen

  • Thomas Büchler, Jannik Olbrich, Enno Ohlebusch. Efficient short read mapping to a pangenome that is represented by a graph of ED strings. Journal: Bioinformatics 2023, https://doi.org/10.1093/bioinformatics/btad320

  • Uwe Baier; Thomas Büchler; Enno Ohlebusch; Pascal Weber. Edge Minimization in de Bruijn Graphs. Information and Computation 2022, doi.org/10.1016/j.ic.2021.104795

  • Thomas Büchler; Caroline Räther, Pascal Weber; Enno Ohlebusch. Coordinate Systems for Pangenome Graphs based on the Level Function and Minimum Path Covers. Conference: BIOINFORMATICS 2021 :  doi.org/10.5220/0010165400210029 (Award: Best Student Paper)

  • Uwe Baier; Thomas Büchler; Enno Ohlebusch; Pascal Weber. Edge Minimization in de Bruijn Graphs. Data Compression Conference 2020, doi.org/10.1109/DCC47342.2020.00030

  • Thomas Büchler; Enno Ohlebusch. An improved encoding of genetic variation in a Burrows-Wheeler transform. Journal: Bioinformatics 2019 ,
  • https://doi.org/10.1093/bioinformatics/btz782

Transforming a bidirected sequence graph into an EDS Graph, to enable the usage of the HPRC reference in the software GED-MAP.

Funktion

Akademischer Mitarbeiter

Sprechzeiten

Nach Vereinbarung

Kontakt

E-Mail
Raum:    O27/532
Telefon: +49 (0)731 50    24108
Fax:        +49 (0)731 50 1224101