Dr. Thomas Schnattinger

Interessen

  • Algorithmen der Bioinformatik
  • Strukturvorhersage, Alignment und Vergleich von RNA
  • Informations- und Kommunikationstheorie in der Molekularbiologie (InKoMBio)
  • etc.

Publikationen

  • T. Schnattinger, U. Schöning, A. Marchfelder, H. A. Kestler (2013)
    RNA-Pareto: interactive analysis of Pareto-optimal RNA sequence-structure alignments
    Bioinformatics, Vol. 29(23), pp. 3102-3104.
    BibTeX:
    @article{Schnattinger2013a,
      author = {Schnattinger, Thomas and Schöning, Uwe and Marchfelder, Anita and Kestler, Hans A.},
      title = {RNA-Pareto: interactive analysis of Pareto-optimal RNA sequence-structure alignments},
      journal = {Bioinformatics},
      year = {2013},
      volume = {29},
      number = {23},
      pages = {3102-3104},
      url = {http://bioinformatics.oxfordjournals.org/content/29/23/3102.abstract},
      doi = {10.1093/bioinformatics/btt536}
    }
    
  • T. Schnattinger, U. Schöning, H. A. Kestler (2013)
    Structural RNA alignment by multi-objective optimization
    Bioinformatics, Vol. 29(13), pp. 1607-1613.
    BibTeX:
    @article{Schnattinger2013,
      author = {Thomas Schnattinger and Uwe Schöning and Hans A. Kestler},
      title = {Structural RNA alignment by multi-objective optimization},
      journal = {Bioinformatics},
      year = {2013},
      volume = {29},
      number = {13},
      pages = {1607--1613},
      url = {http://bioinformatics.oxfordjournals.org/content/29/13/1607.abstract},
      doi = {10.1093/bioinformatics/btt188}
    }
    
  • T. Beller, S. Gog, E. Ohlebusch, T. Schnattinger (2013)
    Computing the longest common prefix array based on the Burrows–Wheeler transform
    Journal of Discrete Algorithms, Vol. 18, pp. 22-31.
    BibTeX:
    @article{Beller2013,
      author = {Timo Beller and Simon Gog and Enno Ohlebusch and Thomas Schnattinger},
      title = {Computing the longest common prefix array based on the Burrows–Wheeler transform},
      journal = {Journal of Discrete Algorithms},
      year = {2013},
      volume = {18},
      pages = {22--31},
      note = {Selected papers from the 18th International Symposium on String Processing and Information Retrieval (SPIRE 2011)},
      url = {http://www.sciencedirect.com/science/article/pii/S1570866712001104},
      doi = {10.1016/j.jda.2012.07.007}
    }
    
  • T. Schnattinger, U. Schöning, H. A. Kestler (2012)
    Pareto-optimal RNA Sequence-Structure Alignments
    In 9th International Workshop on Computational Systems Biology (WCSB 2012), Ulm, Germany, pp. 83-86.
    BibTeX:
    @inproceedings{Schnattinger2012,
      author = {Thomas Schnattinger and Uwe Schöning and Hans A. Kestler},
      title = {Pareto-optimal RNA Sequence-Structure Alignments},
      booktitle = {9th International Workshop on Computational Systems Biology (WCSB 2012), Ulm, Germany},
      year = {2012},
      pages = {83--86},
      url = {http://www.cs.tut.fi/wcsb12/WCSB2012.pdf}
    }
    
  • T. Schnattinger, E. Ohlebusch, S. Gog (2012)
    Bidirectional search in a string with wavelet trees and bidirectional matching statistics
    Information and Computation, Vol. 213, pp. 13-22.
    BibTeX:
    @article{Schnattinger2012a,
      author = {Thomas Schnattinger and Enno Ohlebusch and Simon Gog},
      title = {Bidirectional search in a string with wavelet trees and bidirectional matching statistics},
      journal = {Information and Computation},
      year = {2012},
      volume = {213},
      pages = {13--22},
      note = {Special Issue: Combinatorial Pattern Matching (CPM 2010)},
      url = {http://www.sciencedirect.com/science/article/pii/S0890540112000235},
      doi = {10.1016/j.ic.2011.03.007}
    }
    
  • A. Hölzle, B. Stoll, T. Schnattinger, U. Schöning, B. Tjaden, A. Marchfelder (2012)
    tRNA-like elements in Haloferax volcanii
    Biochimie, Vol. 94(4), pp. 940-946.
    BibTeX:
    @article{Hoelzle2012,
      author = {Annette Hölzle and Britta Stoll and Thomas Schnattinger and Uwe Schöning and Brian Tjaden and Anita Marchfelder},
      title = {tRNA-like elements in Haloferax volcanii},
      journal = {Biochimie},
      year = {2012},
      volume = {94},
      number = {4},
      pages = {940--946},
      url = {http://www.sciencedirect.com/science/article/pii/S0300908411004561},
      doi = {10.1016/j.biochi.2011.12.002}
    }
    
  • T. Beller, S. Gog, E. Ohlebusch, T. Schnattinger (2011)
    Computing the Longest Common Prefix Array Based on the Burrows-Wheeler Transform
    In String Processing and Information Retrieval, Vol. 7024, pp. 197-208, Springer Berlin Heidelberg.
    BibTeX:
    @incollection{Beller2011,
      author = {Timo Beller and Simon Gog and Enno Ohlebusch and Thomas Schnattinger},
      editor = {Grossi, Roberto and Sebastiani, Fabrizio and Silvestri, Fabrizio},
      title = {Computing the Longest Common Prefix Array Based on the Burrows-Wheeler Transform},
      booktitle = {String Processing and Information Retrieval},
      publisher = {Springer Berlin Heidelberg},
      year = {2011},
      volume = {7024},
      pages = {197--208},
      url = {http://dx.doi.org/10.1007/978-3-642-24583-1_20},
      doi = {10.1007/978-3-642-24583-1_20}
    }
    
  • T. Schnattinger, E. Ohlebusch, S. Gog (2010)
    Bidirectional Search in a String with Wavelet Trees
    In Combinatorial Pattern Matching, Vol. 6129, pp. 40-50, Springer Berlin Heidelberg.
    BibTeX:
    @incollection{Schnattinger2010,
      author = {Thomas Schnattinger and Enno Ohlebusch and Simon Gog},
      editor = {Amir, Amihood and Parida, Laxmi},
      title = {Bidirectional Search in a String with Wavelet Trees},
      booktitle = {Combinatorial Pattern Matching},
      publisher = {Springer Berlin Heidelberg},
      year = {2010},
      volume = {6129},
      pages = {40--50},
      url = {http://dx.doi.org/10.1007/978-3-642-13509-5_5},
      doi = {10.1007/978-3-642-13509-5_5}
    }
    
  • T. Schnattinger (2010)
    Bidirektionale indexbasierte Suche in Texten
    Diplomarbeit an der Universität Ulm.
    BibTeX:
    @mastersthesis{Diplomarbeit,
      author = {Thomas Schnattinger},
      title = {Bidirektionale indexbasierte Suche in Texten},
      school = {Universität Ulm},
      year = {2010},
      url = {http://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Mitarbeiter/schnattinger/diplomarbeit.pdf}
    }
    

Funktion

Wissenschaftlicher Angestellter
(02/2010 – 07/2014)